List/Grid Tools

EditR: A Tool to Estimate Base Editing by Sanger Sequencing

EditR (Edit deconvolution by inference of traces in R) as a free web tool (baseEditR.com) or an open source R Shiny application that can run on a local desktop.

Poly peak parser: Tool to identify indels from Sanger sequencing data

Prof H. Joseph Yost’s lab developed a software called Poly peak parser for identification of unknown indels using sanger sequencing of polymerase chain reaction products.This ...

ZiFiT Targeter tool for designing CRISPR, CRISPR nickase targets

ZiFiT was originally developed by the Keith Joung lab  as a tool for the identification of potential zinc finger nulcease (ZFN) sites in specific target sequences. This tool is now ...

E-CRISP, a webtool to deign gRNA constructs for CRISPR-cas

E-CRISP is a software tool to design and evaluate target sites for use with the Clustered Regularly Interspaced Short Palindromic Repeat (CRISPR) system. The web application uses fast ...

Cas-OFFinder: A fast and versatile algorithm that searches for potential off-target sites of Cas9 RNA-guided endonucleases.

Cas-OFFinder is a tool developed by the researchers from Seoul National University, Seoul, South Korea that searches for potential off-target sites in a given genome or user-defined ...

Optimized CRISPR Design Tool by Feng Zhang group

The CRISPR design tool is a web tool developed by Feng Zhnag group at MIT to help researchers in designing CRISPR guide RNA in an input DNA sequence by (i) discovering possible offtargets ...

CasOT: a genome-wide Cas9/gRNA off-target searching tool

The CRISPR/Cas or Cas9/guide RNA system is a newly developed, easily engineered and highly effective tool for gene targeting; it has considerable off-target effects in cultured human ...
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